[Biopython] Reading from binary BLAST db

[Peter Cock]

On Wed, Mar 4, 2015 at 6:12 AM, Alexey Morozov
<alexeymorozov1991 at gmail.com> wrote:
> Is there any support for compiled BLAST databases (*.pin/*.phr/*.psq) I/O in
> biopython? I need to get complete sequences that match, not just hsps that
> Bio.Blast.NCBIXML can read.

No, but you can call the NCBI BLAST+ tool blastdbcmd to do this
(or fastacmd from legacy NCBI BLAST).

Peter