[Biopython] gff3 file

Peter Cock p.j.a.cock at googlemail.com
Tue Jun 2 13:40:58 UTC 2015


On Tue, Jun 2, 2015 at 1:02 PM, Atteyet-Alla.Yassin
<Atteyet-Alla.Yassin at ukb.uni-bonn.de> wrote:
> Hallo Peter - Hiier are the messages. May be arised during copy and paste
> the command you sent? I work with a debian! Therfore please send the command
> as attached file:

https://gist.github.com/peterjc/bf6796adbc9e7737bff6 is a Python script
to be run inside Python, not a shell script to run at the terminal prompt.

Download and save it as something like genbank_to_table.py then run
it like this:

$ python genbank_to_table.py
Converting CP008802
What should we do for FB03_00005 (compound location)? join{[0:6](-),
[2158322:2159306](-)}
Done

Peter


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