[Biopython] Using Phylo to draw trees with images in nodes
Jaime Tovar
jmtc21 at bath.ac.uk
Fri Nov 7 20:11:05 UTC 2014
Hi Jaime,
Sorry for the delay, the workaround looks very interesting, thanks for
the info. Sadly we are looking for something a bit different. We want to
completely automate generation of environments so we can used them to
provide some services which rely on ETE. One of my workmates is working
in a solution using Docker. Will keep you posted about how it goes.
Thanks again!
Jaime.
On 03/11/2014 19:22, Jaime Huerta Cepas wrote:
> Hi Jaime,
> your question led me to write this post explaining a workaround
> solution for the problem of Qt dependencies in ETE:
>
> https://phylohack.wordpress.com/2014/11/01/a-portable-version-of-the-ete-toolkit/
> hope it helps!
> jaime
>
>
> 2014-10-17 17:42 GMT+02:00 Jaime Tovar <jmtc21 at bath.ac.uk
> <mailto:jmtc21 at bath.ac.uk>>:
>
> Linux, x64.
>
> Thanks,
>
> Jaime.
>
>
> On 17/10/2014 16:40, Chris Friedline wrote:
>
> What OS?
>
> --
> Christopher J. Friedline, Ph.D.
> NSF Postdoctoral Research Fellow
> Virginia Commonwealth University
> Richmond, VA 23284
> http://chris.friedline.net
>
>
>
>
> On Oct 17, 2014, at 11:09 AM, Jaime Tovar
> <jmtc21 at bath.ac.uk <mailto:jmtc21 at bath.ac.uk>> wrote:
>
> Hi Chris,
>
> Yes, I want to limit everything to be pip installable...
> and PyQt4 is
> not cooperating. Seems there is no workaround for that
> one. But I'm open
> to suggestions :)
>
> Thanks!
>
> Jaime.
>
> On 17/10/14 15:26, Chris Friedline wrote:
>
> Hi Jaime,
>
> ETE2 is probably the way you want to go here. What
> problems with dependencies are you having? Qt?
>
> Chris
>
> --
> Christopher J. Friedline, Ph.D.
> NSF Postdoctoral Research Fellow
> Virginia Commonwealth University
> Richmond, VA 23284
> http://chris.friedline.net
>
>
>
>
> On Oct 17, 2014, at 9:05 AM, Jaime Tovar
> <jmtc21 at bath.ac.uk <mailto:jmtc21 at bath.ac.uk>> wrote:
>
> Hi all,
>
> Sorry, seems my google fu is low today. Have been
> trying to find information about a way to add
> small images next to the species names in trees
> generated with Biopython/Phylo. But I'm not even
> sure it is possible. I want to do something in the
> likes of trees produced with ETE2. I can't use
> ETE2 because of problems with the dependencies :(.
>
> Thanks in advance for any help!
>
> Jaime.
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