[Biopython] iterating over FeatureLocation
Peter Cock
p.j.a.cock at googlemail.com
Mon Jan 13 15:38:54 UTC 2014
On Mon, Jan 13, 2014 at 3:09 PM, Michael Thon <mike.thon at gmail.com> wrote:
> I need to iterate over all the features of a sequence, and then
> iterate over the locations/sublocations in each feature. I’m not
> sure how to work with the sublocations though:
>
> I need to do something like this:
>
> for feat in seq.features:
> for loc in feat.locations:
> start = loc.start
> …
>
> which does not work but maybe shows what I need to do.
> Can anyone help me out?
Are you talking about join locations? Could you give an example
(e.g. link to a GenBank file) and what you want to look at?
Peter
P.S. This changed a bit back in Biopython 1.62 with the introduction
of the CompoundLocation object.
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