[Biopython] (Bio.PDB) problems with NeighborSearch: error at levels above "A", residue index discrepancy with unfold_entities

Peter Cock p.j.a.cock at googlemail.com
Fri Oct 18 11:08:41 UTC 2013


On Thu, Oct 17, 2013 at 11:05 PM, James Jensen <jdjensen at eng.ucsd.edu> wrote:
>
> I was using Python 3.2 when I got the "unorderable types" error. For
> unrelated reasons, I ended up switching to Python 2.7.3, and now doing
> search_all at the residue level works.

Can you reduce that to a short test case? It sounds like something
we may need to address in the Python 2/3 compatibility.

Thanks,

Peter



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