[Biopython] Issues with BioSQL and BioPython--can't access features and annotation

Dan Tomso dtomso at agbiome.com
Mon Mar 4 21:37:33 UTC 2013


Gents--
Updating to the github version of BioPython has solved the problem, although I am not greatly enlightened.  If you are in debug mode, let me know if there is anything I can do to help, otherwise I will proceed w/ some crazy science . . .

Many thanks!!

Dan T.


On Mar 4, 2013, at 4:13 PM, Tiago Antão <tiagoantao at gmail.com> wrote:

> 
> 
> 
> On Mon, Mar 4, 2013 at 8:59 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> Could you update to Biopython 1.61 (or the latest code from GitHub)
> and retest?
> 
> 
> For good or for bad, there have been a few changes on BioSQL on github. It might be more efficient to test with the github version (not 1.61), either that or the comparison of results and creation of unit tests might be a bit confusing at this stage (with the changing code base)
> 





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