[Biopython] NCBIXML : tile hps
Celine Noirot
Celine.Noirot at toulouse.inra.fr
Thu Jul 11 09:36:30 UTC 2013
Hi,
I' parsing blast output and I'm looking for a script which do the same
thing as Bio::Search::SearchUtils::tile_hsps in bioperl
(http://search.cpan.org/~cjfields/BioPerl-1.6.900/Bio/Search/SearchUtils.pm)
Indeed, I want to have the % of identities/conserved base on the query,
the % of coverage of the query and the subject for the entire hit and
not only by hsp.
Does anybody know where I can find it or have already done it?
Thanks
Céline
--
Céline Noirot
Plateforme Bioinfo Genotoul- Unité BIA
INRA, 24 Chemin de Borde Rouge - Auzeville
CS 52627
31326 Castanet Tolosan cedex
Tel. 05 61 28 57 24
http://bioinfo.genotoul.fr
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