[Biopython] gff3 writting

[Mic]

Thank you it is working, but why python did not complain previously?

Mic


On Tue, Jul 2, 2013 at 7:26 PM, Brad Chapman <chapmanb at 50mail.com> wrote:

>
> Mic;
> Thanks for the feedback, comments below.
>
> > I found here (
> > http://biopython.org/wiki/GFF_Parsing#Writing_GFF3_from_scratch ) an
> > example how to write GFF3 from scratch.
> >
> > I modified it in order to add one more features and sub_features, but the
> > second sub_features are not visible:
> [...]
> > with the following code:
> [...]
> > top_feature2.sub_features2 = [SeqFeature(FeatureLocation(30, 35),
> > type="exon", strand=1,
> >                                        qualifiers=sub_qualifiers2),
> >                             SeqFeature(FeatureLocation(37, 40),
> > type="exon", strand=1,
> >                                        qualifiers=sub_qualifiers2)]
>
> You want to specify these as the `sub_features` attributes (not
> `sub_features2`). Hope this helps sort it out,
> Brad
>