[Biopython] NcbiblastnCommandline vs subprocess blast
Tanya Golubchik
golubchi at stats.ox.ac.uk
Wed Aug 21 11:38:36 UTC 2013
Hi Peter,
Thank you for your help. You're right that it's the word size, although
not in the way this was suggesting -- what happened was that with my
selected word size, some queries were failing with -culling_limit 1 (I
still don't quite know why this happens, it seems to be a blast bug) and
defaulting to culling limit 2 -- which is fine, but at this point they
were losing the word size argument (my stuff-up).
Thanks again!
Tanya
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