[Biopython] Problem installing biopython with Python 3.3.1.rc1

[Peter Cock]

On Sat, Apr 6, 2013 at 4:31 PM, Nicolas Joannin
<nicolas.joannin at gmail.com> wrote:
> Hello everyone,
>
> I'm having a problem installing biopython with Python 3.3.1rc1...
> Basically, I get several tests failing (in addition to a lot of warnings).
>
> I don't think the failed tests will be a problem for my work, however, I
> thought you'd want to have a look... Attached is the output of python3
> setup.py test.
>
> Also, if you think I shouldn't use biopython without having these failed
> tests fixed first, please let me know!
>
> Best regards,
> Nicolas

Hi Nicolas,

You should be OK installing this - all the test failures are
within Bio.bgzf which is curious, but you probably won't be
using BGZF compressed files.

We do have buildslaves testing on Python 3.3.0 where this
does not happen, so perhaps this is a new failure from a
change in Python 3.3.1rc1 - hopefully I'll be able to confirm
that by updating one of the buildslaves.

Thanks for the alert,

Peter