[Biopython] topology of transmembrane proteins in BioPython
Fields, Christopher J
cjfields at illinois.edu
Tue Nov 20 19:17:34 UTC 2012
On Nov 20, 2012, at 9:28 AM, Peter Cock <p.j.a.cock at googlemail.com>
wrote:
> On Tue, Nov 20, 2012 at 3:23 PM, Fields, Christopher J
> <cjfields at illinois.edu> wrote:
>> There was some code submitted to BioPerl a while back that does this, it's now in Lincoln's Bio-Graphics module (which uses libgd2):
>>
>> https://github.com/GMOD/Bio-Graphics/blob/master/lib/Bio/Graphics/DrawTransmembrane.pm
>>
>> I recall testing it and it worked well, but it's been quite a while. It seemed pretty straightforward if someone wanted to try porting it.
>>
>> chris
>
> That produces images like this does it?
> http://www0.cs.ucl.ac.uk/staff/T.Nugent/images/CLN3_Consensus_Labelled.png
>
> From here:
> http://www0.cs.ucl.ac.uk/staff/T.Nugent/code.html
Yup, that's it!
chris
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