[Biopython] VCF parser
Andreas Wilm
andreas.wilm at gmail.com
Tue Oct 25 06:26:59 UTC 2011
HI Tiago,
I'm not aware of a Biopython VCF parser, but pysam seems to have one
(haven't used it though). Try
>>> from pysam import cvcf
You also might want to check an implementation which was posted on
seqanswers: http://seqanswers.com/forums/archive/index.php/t-9266.html
Andreas
PS:
For the sake of completeness: your question was asked before here (no
replies). See http://www.biopython.org/pipermail/biopython/2011-March/007131.html
2011/10/4 Tiago Antão <tiagoantao at gmail.com>:
> Hi,
>
> I wonder if there is a VCF parser in either Python or Java? Either I
> am being dumb at searching (probably) or nothing exists?
>
> Thanks,
> Tiago
>
> --
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Andreas Wilm
andreas.wilm at gmail.com | mail at andreas-wilm.com | 0x7C68FBCC
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