[Biopython] Calculating Buried and Surface Residues

Willis, Jordan R jordan.r.willis at Vanderbilt.Edu
Thu Nov 24 00:57:19 UTC 2011


Hello Biopython,

I was wondering if anyone had a script, knew of a script, API, web-server, Pymol example, etc. to do something I have seen in so many papers but can't seem to find a way to do it. That is, given a PDB, calculate which residues are considered buried, and which ones are considered solvent exposed. If this is easy in Biopython, I would love to use it. Otherwise, if anyone knows anything out there for this task, please let me know.

Thanks so much!

Jordan







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