[Biopython] Problem in accessing pcassay database

Peter Cock p.j.a.cock at googlemail.com
Thu May 12 09:15:37 UTC 2011


On Thu, May 12, 2011 at 9:39 AM, sai nitin <sainitin7 at gmail.com> wrote:
> Hi all,
>
> I am new to Biopython i want to access pcassay database programatically the
> exact issue is described below
>
> --- I have list of Bioassay AIDs i want retrieve all Names i treid esummary
> to do this but it is giving error
> also tried to efetch but didnt succeed..
>
> Can any body tell me possible solution...
>
> Thanks

Hi,

Can you do this by hand? Which website would you use? If NCBI Entrez,
then it should be possible using Biopython's Bio.Entrez module.

Could you give an example, say two Bioassay AIDs, and the expected
results (e.g. URLs to NCBI webpage).

Peter



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