[Biopython] Query
isha srivastava
srivastavaisha.06 at gmail.com
Fri Jul 15 07:29:42 UTC 2011
Hello,
I am new user of BioPython.
I have Downloaded the latest version of BioPython i.e. BioPython 1.57.
fallowed all the instructions according to tutorial.
but wen i am running the program :
>>> from Bio import SeqIO
>>> for seq_record in SeqIO.parse("ls_orchid.fasta", "fasta"):
... print seq_record.id
... print repr(seq_record.seq)
... print len(seq_record)
...
it is showing error as fallows :-
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/usr/lib/pymodules/python2.6/Bio/SeqIO/__init__.py", line 424, in
parse
raise TypeError("Need a file handle, not a string (i.e. not a
filename)")
TypeError: Need a file handle, not a string (i.e. not a filename)
Sir, how to solve this error?
Kindly make a soon reply.
With due regards,
Isha
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