[Biopython] FASTQ to qual+fasta
Iddo Friedberg
idoerg at gmail.com
Sun Jan 16 18:48:09 UTC 2011
question regarding the use of SeqIO.convert: how do I convert a FASTQ file
to qual and fasta files? Currently it seems that I have to run SeqIO.convert
twice e.g.:
SeqIO.convert(open("infile.fastq"),"fastq",open("outfile.qual","w"),"qual")
SeqIO.convert(open("infile.fastq"),"fastq",open("outfile.fasta","w"),"fasta")
Or am I missing something?
Thanks,
./I
--
Iddo Friedberg
http://iddo-friedberg.net/contact.html
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