[Biopython] DSSP python version

[Rojan Shrestha]

Hello Joao:

 

Thank you very much.

 

I found in Biopython but I got another problem to use it. When we do not have last column of PDB file, it gives an error. It is a problem for pdbparser library. 

 

Regards,

 

Rojan

 

From: João Rodrigues [mailto:anaryin at gmail.com] 
Sent: Friday, January 21, 2011 4:21 PM
To: rojan at riken.jp
Cc: biopython at lists.open-bio.org
Subject: Re: [Biopython] DSSP python version

 

Hey Rojan,

Biopython provides an interface to the command line DSSP. To my knowledge, no "python version" of DSSP exists. You'll have to get the program from G.Vriend's webpage and then use either Biopython or your own code to pass arguments and parse output.

João