[Biopython] GTF to GFF using BCBio
Jaime Tovar
jmtc21 at bath.ac.uk
Thu Dec 1 16:45:40 UTC 2011
Reply from BCBio library's author:
https://github.com/chapmanb/bcbb/blob/master/gff/Scripts/gff/gff2_to_gff3.py
and will cover GFF2/GTF files into GFF3.
J.
On 01/12/11 14:09, Jaime Tovar wrote:
> Hello all,
>
> I was trying to find an example on how to get a gff3 formated file
> from a gtf file using the BCBio library extensions for biopython. I
> the doc it only covers non-gff-family formats to gff3. I guess is just
> a parameter thing in the GFF writer but have been looking
> unsuccessfully for the answer. Any hint will be greatly appreciated.
>
> Best regards,
>
> J.
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