[Biopython] deleting in-group paralogs from newick trees

Jessica Grant jgrant at smith.edu
Mon Aug 8 18:08:25 UTC 2011


Hello,

I am looking at large phylogenetic trees that have many paralogs.  I  
would like to simplify my trees so that all monophyletic paralog  
groups are collapsed--or all sequences except the shortest branch are  
deleted.  Is there a Biopython module that can help?  I started  
looking at Phylo, but couldn't see an obvious way.

Thanks,

Jessica







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