[Biopython] Fwd: Other: Tree class

[Peter Cock]

Hi Wasiu,

Yes, Biopython can handle trees and parsing Newick format should be
easy with the Bio.Phylo module. See the "Phylogenetics with Bio.Phylo"
chapter in our Tutorial:

http://biopython.org/DIST/docs/tutorial/Tutorial.html
http://biopython.org/DIST/docs/tutorial/Tutorial.pdf

If you have more specific questions, please sign up to the Biopython
mailing list and ask here: http://biopython.org/wiki/Mailing_lists

Thanks Hilmar,

Peter

On Fri, Apr 1, 2011 at 4:39 PM, Hilmar Lapp <hlapp at drycafe.net> wrote:
> Would someone mind updating this fellow on what the support in Biopython is
> for parsing trees? I don't have it all in my memory, but my recollection is
> that there is.
>
>        -hilmar
>
> Begin forwarded message:
>
>> From: evoldir at evol.biology.mcmaster.ca
>> Date: April 1, 2011 1:15:40 AM EDT
>> Subject: Other: Tree class
>>
>>
>> Anyone have experience in Python or in writing a tree class. I am
>> particularly stuck on how to parse the tree (in newick format) and how to
>> join the node class and edge class together. Can anyone help?
>>
>> Aj
>>
>> Wasiu Akanni <waakanni13 at gmail.com>
>>
>
> --
> ===========================================================
> : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net :
> ===========================================================
>
>
>
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