[Biopython] Intro
Dragoslav Zaric
zaricdragoslav at gmail.com
Tue Sep 14 11:08:55 UTC 2010
Dear All,
I am new member and I like to send welcome greet to everyone.
I have few newbie questions so please be cooperative :)
1. How can I see biopython version and is there connection between python
version
and biopython version ?
2. I have installed python 2.6 and biopython 1.55 on ubuntu 9.04 (at least I
think I did :)
I have same installation on windows machine and everything works fine.
But for example when I want to use something like this:
from Bio import SeqIO
orchid_dict = SeqIO.index("d:\ls_orchid.fasta", "fasta")
Two problems happens in ubuntu environment:
first is that SeqIO complains that there is no index method
second is that everywhere I should put string location of file
biopython wants handle to file
The first thing I can think of is maybe I am using old version of
biopython, which points to question 1.
3. Does somebody have experience with using biopython in django web site ?
Do I install biopython on web server or I can keep libraries in some
folder and
load them dynamically in code ?
Kind regards,
Dragoslav Zaric
Programmer
Msc. in Astrophysics
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