[Biopython] parsing newick trees in memory
Matthew Strand
stran104 at chapman.edu
Sun Oct 10 07:37:55 UTC 2010
You might find useful: Newick: A python module for parsing trees in the
Newick file format.
http://www.daimi.au.dk/~mailund/newick.html
Cheers,
Matt Strand
- Hide quoted text -
On Sat, Oct 9, 2010 at 11:09 PM, Michael Thon<mike.thon at gmail.com> wrote:
> I have a String containing a tree in newick format and I want to turn it
> into biopython objects. The Bio.Phylo.read() function seems to only take
> file names or file handles as parameters. Is there any way to do this
> without actually saving the string to a file first?
> Thanks
> Mike
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