[Biopython] biopython and jython

[Kyle]

If you are having trouble finding the BioPython code, you can build a
jar file to hold it, and add that to the server setup.
In the BioPython source folder, run the following:
$ jython setup.py build
$ jar cvf BioPython.jar -C build/lib ./

Include the produced jar file in your CLASSPATH or server build.

Kyle

On Thu, May 20, 2010 at 7:41 AM, Peter <biopython at maubp.freeserve.co.uk> wrote:
> On Thu, May 20, 2010 at 3:38 PM, Silvio Tschapke wrote:
>> Hi all,
>>
>> can anybody tell me if biopython supports jython?
>
> Most of it works, yes. Parts of Biopython use code written in C or NumPy
> (e.g. Bio.Cluster and Bio.PDB) which won't work though.
>
>> I am using Java Servlets in tomcat and Jython and thought there won't be
>> problem to call Biopython modules from Jython. But Biopython is not included
>> in jython.jar.
>
> I think there is a Jython path environment variable you can set...
>
> Peter
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