[Biopython] PDB Construction Error
Bhima van der Molen
bav853 at bham.ac.uk
Wed May 5 16:20:41 UTC 2010
Hi Everyone,
I am working on protein structure data, where I store solvent accessibility
data in the b-factor column of PDB files.
Recently I have encountered this error:
structure = parser.get_structure('structure_id', fileName)
File "/usr/lib/pymodules/python2.6/Bio/PDB/PDBParser.py", line 64, in
get_structure
self._parse(file.readlines())
File "/usr/lib/pymodules/python2.6/Bio/PDB/PDBParser.py", line 84, in
_parse
self.trailer=self._parse_coordinates(coords_trailer)
File "/usr/lib/pymodules/python2.6/Bio/PDB/PDBParser.py", line 159, in
_parse_coordinates
raise PDBConstructionError("Invalid or missing coordinate(s) at line
%i." \
NameError: global name 'PDBContructionError' is not defined
Has anyone come across this before? If so, is there a fix?
Thanks
Bhima
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