[Biopython] RNA Secondary structure

[Peter]

On Sat, Mar 20, 2010 at 2:53 AM, Gregory Barendt
<barendt at mail.med.upenn.edu> wrote:
> Does anyone know of good libraries for looking at RNA secondary
> structure? I'm looking for particular stem loops in particular locations
> in lots (hundreds of thousands) of sequences.
>
> Right now, I'm pretty inelegantly parsing the .ct file generated by
> UNAfold. I need to modify my search to be a little more flexible, so
> I'd much rather use an existing tool than continue to reinvent the
> wheel. Any advice would be greatly appreciated.
>
> Thanks,
> Greg

I think Kristian Rother was looking at RNA support in Biopython last
year (CC'd).

Peter