[Biopython] Bio.SeqIO.index() - gzip support and/or index stored on disk?

[Chris Fields]

On Jun 4, 2010, at 2:04 PM, Peter wrote:

> On Fri, Jun 4, 2010 at 7:25 PM, Laurent <lgautier at gmail.com> wrote:
> 
>> 
>> More generally, compression is part of the HDF5 format and this with chunks
>> could prove the most battle-tested way to access entries randomly.
>> 
> 
> But (thus far) no sequence data is stored in HDF5 format (is it?).
> 
> Peter

There will be a presentation this year at BOSC on BioHDF (HDF5 for bioinformatics).  There is a website:

http://www.hdfgroup.org/projects/biohdf/

chris