[Biopython] Organism specific NCBIWWW qblast

Brett Bowman bnbowman at gmail.com
Sat Jan 9 01:34:34 UTC 2010


Hello gents,

I'm trying to create a dataset of proteins that are both highly
similar to, and from the same species as, my query sequence.  Since
I'm going to be doing this repeatedly, for many different query
sequences, I'm trying to automate the process with Biopython, but I
can't figure out how to enable organism-specific blasts with qblast.
Any guidance be greatly appreciated.

-Brett Bowman
Woelk Lab
UCSD School of Medicine
UCSD/SDSU Joint Bioinformatics Program



More information about the Biopython mailing list