[Biopython] HMMER / Pfam support

Peter biopython at maubp.freeserve.co.uk
Tue Dec 7 12:45:53 UTC 2010


On Sat, Dec 4, 2010 at 4:50 AM, Ruchira Datta <ruchira.datta at gmail.com> wrote:
> I had written a HMMER3 parser independently (i.e., not based on any previous
> work), if that helps.  However, I wrote it thinking of our group's needs, so
> it may not be BioPythonic.

Hi Ruchira,

Is your code online somewhere? It would certainly be worth looking at
- especially
if we can't sort out the GPL license issue with Kyle's code.

[Some of Kyle's HMMER3 code is fine from a license point of view, for example
the Biopython style application wrapper class]

Peter




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