[Biopython] How to get sequences upstream of TSS of genes?

[Giovanni Marco Dall'Olio]

On Fri, Oct 16, 2009 at 4:55 PM, Steve Lianoglou
<mailinglist.honeypot at gmail.com> wrote:
> Hi,
>
> On Oct 16, 2009, at 10:52 AM, Peng Yu wrote:
>
>> On Fri, Oct 16, 2009 at 3:29 AM, Giovanni Marco Dall'Olio
>> <dalloliogm at gmail.com> wrote:
>>>
>>
>> I have gene names (for example, Krt83) what geneIDs shall I choose?
>
> Since your on ensembl's web site, I'd imagine ensembl gene id's might be a
> good bet, no? :-)

exactly, but if you look at the form more carefully you will see that
there is a menu from which you can choose the type of geneId, for
example: ensembl, kegg, ncbi, etc...

note: I didn't send you the ufficial biomart's link. The right one is:
- http://www.ensembl.org/biomart/martview




> -steve
>
> --
> Steve Lianoglou
> Graduate Student: Computational Systems Biology
>  |  Memorial Sloan-Kettering Cancer Center
>  |  Weill Medical College of Cornell University
> Contact Info: http://cbio.mskcc.org/~lianos/contact
>
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-- 
Giovanni Dall'Olio, phd student
Department of Biologia Evolutiva at CEXS-UPF (Barcelona, Spain)

My blog on bioinformatics: http://bioinfoblog.it