[Biopython] Problems parsing with PSIBlastParser

[Miguel Ortiz Lombardia]

Le 15 oct. 09 à 18:32, Peter a écrit :
>
>> I still believe that the logic behind the  
>> NCBIStandalone.PSIBlastparser is
>> correct or, at least, useful. But I could change my mind if you think
>> otherwise.
>
> The idea of the NCBIStandalone.PSIBlastparser plain text parser, and
> its object structure makes sense.
>

Good!

>> I have filed the bug:
>> http://bugzilla.open-bio.org/show_bug.cgi?id=2929
>> and have upload the XML from blastpgp v. 2.2.22 mentioned above.
>
> Lovely - thank you. So that is a single query, with 3 iterations.
> What would be *really* nice, is a multiple query file (say three
> queries, each needing just a few iterations to keep the file small).


Never used multiple query file... Do you mean starting from a multiple- 
alignment file with the -B option?

-- Miguel