[Biopython] How to get intron/exon boundaries?

Peter biopython at maubp.freeserve.co.uk
Fri Nov 27 23:03:12 UTC 2009


On Fri, Nov 27, 2009 at 10:56 PM, Peng Yu <pengyu.ut at gmail.com> wrote:
> I'm wondering how to get intron exon boundaires for all the genes.
> Could somebody show me what functions I should use?

What do you want to know? The co-ordinates of the intron/exons,
or just to get the coding sequence?

What kind of data are you looking at? For GenBank or EMBL
files this is encoded in the CDS feature locations. For GFF
files I think this information is given explicitly,

Peter



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