[Biopython] ExPASy.get_sprot_raw giving a FASTA record instead of a Swiss-Prot/UniprotKB record?
Peter
biopython at maubp.freeserve.co.uk
Mon Nov 16 10:23:16 UTC 2009
On Thu, Nov 12, 2009 at 11:43 PM, Peter <biopython at maubp.freeserve.co.uk> wrote:
>
> P.S. Perhaps we should also update our URLs, but that
> won't help people using the current version of Biopython.
>
I checked the ExPASy page http://www.expasy.ch/expasy_urls.html
then updated our code to use the currently recommended URL,
http://www.uniprot.org/uniprot/XXX.txt instead of the old URL,
http://www.expasy.ch/cgi-bin/get-sprot-raw.pl?XXX
If anyone is curious about the details, see:
http://github.com/biopython/biopython/commit/6689bf8657d9515965d63f9c77e6348233472046
This means the next release of Biopython will not depend on the
old ExPASy URL, but it would still be ideal if ExPASy/Uniprot
could fix that for the benefit of users of older versions of Biopython
and other scripts. Did you try and contact them about this yet?
Thanks,
Peter
More information about the Biopython
mailing list