[BioPython] help with NCBIWWW.qblast
Jessica Grant
jgrant at email.smith.edu
Fri Jan 2 18:01:45 UTC 2009
I wrote a script that uses NCBIWWW.qblast and it worked last time I
tried it (a few weeks ago) but this morning I get the following error
message:
File "tblastn.py", line 41, in tblastn
result_handle = NCBIWWW.qblast("tblastn", "nr", fas.seq.data)
File
"/root/biopython-1.49/build/lib.linux-i686-2.4/Bio/Blast/NCBIWWW.py",
line 770, in qblast
File
"/root/biopython-1.49/build/lib.linux-i686-2.4/Bio/Blast/NCBIWWW.py",
line 837, in _parse_qblast_ref_page
ValueError: A non-integer RTOE found in the 'please wait' page, ''
Does this sound like an ncbi error or like something I should be able
to work around? Thanks for the help!
--
Jessica Grant
Phone: 413-585-3750
Fax: 413-585-3786
jgrant at email.smith.edu
http://www.science.smith.edu/departments/Biology/lkatz/people/jgrant
More information about the Biopython
mailing list