[Biopython] Parsing problem

Peter biopython at maubp.freeserve.co.uk
Wed Dec 9 15:26:18 UTC 2009


On Wed, Dec 9, 2009 at 2:51 PM, Iwan Grin <iwan.grin at googlemail.com> wrote:
> Brad, Thank you very much!
>
> as much as this is a hack, it works for what I want to have. I guess for
> future proofness, either the parsers from Bio.GenBank should be exposed, or
> the coded_by qualifier should be parsed as location by default, although I
> am not sure how well the latter idea fits into the present data structure.

Brad's trick still work in Biopython 1.53 at the very least. I think we'll
try and make the location parser more accessible in future, but
changing the parsing of "coded_by" qualifiers would risk breaking
existing user scripts.

Peter



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