[Biopython] Wanting to teach a class on biopython ..

[Brad Chapman]

Hi Tim;
I'm not aware of Python code to do BioBricks design, but a couple of
repositories for synthetic biology code in Python are:

SynBioPython: http://code.google.com/p/synbiopython/
My Synthetic Biology code: http://bitbucket.org/chapmanb/synbio/

Unfortunately these are more starting points than tutorial ready
code.

Hope this helps,
Brad

> I am very interested in common bio python tasks as they relate specifically
> to synthetic biology.  Could you give me some examples of such tasks?
> -Tim
> 
> On Tue, Aug 25, 2009 at 10:06 AM, William Heath <wgheath at gmail.com> wrote:
> 
> > This is amazing thanks!
> > -Tim
> >
> >
> > On Tue, Aug 25, 2009 at 1:58 AM, Kristian Rother <krother at rubor.de> wrote:
> >
> >>
> >> Hi William,
> >>
> >> I was teaching Python/BioPython in several courses for Biologists. I wrote
> >> some individual lesson plans but they are rather not readable for other
> >> people (see attachment). There is some material on-line, though:
> >>
> >> http://www.rubor.de/lehre_en.html
> >>
> >> Typically, the lessons consisted of 2h lecture + 1h exercises on language
> >> concepts + 3h exercises on a single, more biological task. The code written
> >> during the latter was reviewed and scored and the students knew about that.
> >> They had a two-week Python crash course before.
> >>
> >> Details on request.
> >>
> >> Best Regards,
> >>   Kristian
> >>
> >>
> >> William Heath schrieb:
> >>
> >>> Hi All,
> >>> I am a member of Tech Shop in Mountain View, CA and I want to teach a
> >>> class
> >>> on biopython that is specifically tailored toward the goals of synthetic
> >>> biology.  Can anyone help me to come up with lesson plan for such a
> >>> class?
> >>>  In particular I want to use bio bricks, and good opensource design
> >>> programs
> >>> for biobricks.  Can anyone recommend any?
> >>>
> >>> I also want to utilize any/all concepts in this training:
> >>>
> >>> http://www.edge.org/documents/archive/edge296.html
> >>>
> >>> Please let me know your ideas on such a lesson plan.
> >>>
> >>>
> >>> -Tim
> >>> _______________________________________________
> >>> Biopython mailing list  -  Biopython at lists.open-bio.org
> >>> http://lists.open-bio.org/mailman/listinfo/biopython
> >>>
> >>>
> >>>
> >>
> >>
> >
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