[BioPython] Reading Roche 454 binary SFF files in Python

Peter biopython at maubp.freeserve.co.uk
Fri Apr 17 12:06:42 UTC 2009


On Wed, Apr 15, 2009 at 11:04 AM, Martin MOKREJŠ
<mmokrejs at ribosome.natur.cuni.cz> wrote:
> Hi,
> ...
> Just some random links to NCBI Trace Archive:
>
> ftp://ftp.ncbi.nih.gov/pub/TraceDB/ShortRead
> http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=table&f=study&m=data&s=study
> http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP000001 (has 454 data from 2007)
> http://www.ncbi.nlm.nih.gov/sites/entrez?db=sra&report=full&term=SRX003639
> ftp://ftp.ncbi.nih.gov/pub/TraceDB/ShortRead/sff2scf/sff2scf.tar.gz
>
> Hope this helps,
> Martin

Thanks for those links Martin,

I've use a FASTQ file from that list for a couple of examples I've
just added to the tutorial.

Peter




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