[BioPython] problem loading NCBI_taxonomy database into bioseqdb

[Peter]

On Wed, Sep 3, 2008 at 12:19 AM, Nick Matzke <matzke at berkeley.edu> wrote:
> Hi all,
>
> I'm following the BioSQL tutorial at the biopython website
> (http://www.biopython.org/wiki/BioSQL#NCBI_Taxonomy ).  I can get bioseqdb
> to work, and the biosql python scripts etc.
>
> However I can't get these directions to work in loading the taxonomy
> database into bioseqdb.  I get: "Can't locate object method "connect" via
> package "DBI" "
>
> I double-checked to make sure I've got DBI in perl (see error message below)
> but that doesn't seem to help.

This does sound like a question for the BioSQL mailing list (which I
see you've now asked on).  I'm no perl expert - so if you can resolve
this via the BioSQL mailing list, and we can improve the Biopython
BioSQL wiki page, that would be great.

Peter