[BioPython] Cladograms
Renato Alves
rjalves at igc.gulbenkian.pt
Thu Nov 27 15:17:38 UTC 2008
Hi everyone,
I've been searching the web for python modules to do cladograms but the
only relevant stuff I found was relative to dendograms and hierarchical
clustering which will give the representation I need.
My goal is something that resembles a heatmap[1] but where the trees
will be cladograms[2] instead of the result of clustering steps.
I know that probably I won't find modules doing exactly what I want,
which is why I'm searching for tools to do each step separately and try
to glue them somehow. For the heatmap I have something already that will
probably do the job, but for the cladograms I couldn't find any decent
module.
Do you happen to know any dark alley in BioPython or any other external
module that would allow me to do the cladogram?
Thanks,
Renato
[1] -
http://www2.warwick.ac.uk/fac/sci/moac/currentstudents/peter_cock/r/heatmap/default_heatmap.png
[2] -
http://www.csupomona.edu/~jcclark/classes/bot125/resource/graphics/c/cladogram.gif
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