[BioPython] Sequence graph

Pierre-Yves pingou at pingoured.fr
Mon Nov 3 11:07:23 UTC 2008


Hi Leighton,

Leighton Pritchard wrote:
> Robert Cadena and I are working on incorporating GenomeDiagram (
> http://bioinf.scri.ac.uk/lp/programs.php) into Biopython.  It works
> differently to the Perl code, though you could make images rendering the
> same information as in the BioPerl example you link to.  Even though it's
> not yet part of Biopython, it does play nicely with Biopython, so you might
> like to try it out.
Thanks for the link I will have a look at it.

> 
> If you are specifically looking to create a graphical representation of
> BLAST output, then I have a Python script that might be useful to you.
> Please get in touch if you'd like a copy.

It is not exactly a BLAST output but it could be approximate to, so 
actually yes I would be interested by your script.

Thanks again,

Best regards,

P.Yves



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