[BioPython] PSI-BLAST using NCBIWWW

Katie Edmonds betainverse at gmail.com
Wed May 7 21:02:42 UTC 2008


Hi,

I'm trying to use biopython to run psi-blast on the ncbi server.  It looks
like qblast cannot be used for psi-blast, and as far as I can tell blast()
doesn't work at all anymore, though it has a 'run_psiblast' parameter.  Has
anyone had success with running psi-blast with biopython who could offer
some advice?

Thanks,
Katie



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