[BioPython] sc_match and sc_mismatch are empty.
Peter
biopython at maubp.freeserve.co.uk
Mon Mar 31 11:30:32 UTC 2008
Hi Sebastian,
That sounds like a bug - could file this issue on Bugzilla please?
You could also try this with the example Tests/Blast/xbt002.xml in our
unit tests from Blast 2.2.12 just to see if the XML format has
changed.
Peter
On Mon, Mar 31, 2008 at 7:26 AM, Sebastian Bassi <sbassi at gmail.com> wrote:
> sc_match and sc_mismatch are empty when there should be: 1 and -3.
>
> >>> fr=NCBIXML.parse(open(f_in)).next()
> >>> fr.version
> u'2.2.17'
> >>> fr.application
> u'BLASTN'
> >>> fr.expect
> u'10'
> >>> fr.sc_match
> >>> fr.sc_mismatch
>
> The xml file is here:
> http://www.pastecode.com.ar/f7a880f5a
> (click here to download: http://www.pastecode.com.ar/pastebin.php?dl=f7a880f5a)
>
More information about the Biopython
mailing list