[BioPython] Module for ace assembly format
Peter Cock
p.j.a.cock at googlemail.com
Tue Mar 25 14:34:34 UTC 2008
On Tue, Mar 25, 2008 at 2:23 PM, Bruno Santos <bsantos at biocant.pt> wrote:
> Hi,
>
> I'm currently working in an assembly project and I need to read some files
> in ace assembly format, my question is if biopython have any module to do
> this. I have done a search in google and I found some references to a
> bioperl module, but in the biopython website I didn't find any information
> about this format.
Hi Bruno,
Have a look at the Bio.Sequencing.Ace module for ACE files output by
PHRAP. We don't seem to have anything in the main tutorial on this,
so if you would like to write a short piece for the "cookbook" chapter
that would be helpful
Peter
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