[BioPython] Sequence from Fasta
Giovanni Marco Dall'Olio
dalloliogm at gmail.com
Mon Jun 30 09:40:23 UTC 2008
On Sun, Jun 29, 2008 at 4:42 PM, Stefanie Lück <lueck at ipk-gatersleben.de> wrote:
> If I try the code from page 10 in the tutorial, I get of course this:
Seq('CGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGATGAGACCGTGGAATAAA
...', SingleLetterAlphabet())
Try with seq_record.seq.data.
> But I'm looking for something like this:
>
> Name Sequence without linebreak
>
> Example:
>
> MySequence atgcgcgctcggcgcgctcgfcgcgccccccatggctcgcgcactacagcg
> MySequence2 atgcgctctgcgcgctcgatgtagaatatgagatctctatgagatcagcatca
Bioperl's SeqIO has support for a 'tab sequence format' which is
similar to this[1].
Maybe it could be useful in the future to add support for such a
format in biopython.
[1] http://www.bioperl.org/wiki/Tab_sequence_format
>
> Regards
> Stefanie
> _______________________________________________
> BioPython mailing list - BioPython at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/biopython
>
--
-----------------------------------------------------------
My Blog on Bioinformatics (italian): http://bioinfoblog.it
More information about the Biopython
mailing list