[BioPython] Uniprot Parser

[Jonathan Boulais]

Hi everyone, 

I'm a little bit concerned about the speed of the parsing/loading of the Uniprot .dat files into the Biosql database. It takes a hell of a time...
Would it be faster to parse the .dat file and write the data into a temporary files and import it in one shot ?

Just a suggestion, 

Jonathan



> Date: Sat, 23 Feb 2008 22:00:02 +0000
> From: anaryin at gmail.com
> To: biopython at biopython.org
> Subject: [BioPython] Uniprot Parser
> 
> Hello all!
> 
> I've written a small parser for the uniprot_sprot.dat files that come out
> once and again because I read about some incompatibilities of the
> Biopython's with the source files. Now I want to rewrite and clean the code
> and I'm considering (strongly) to rewrite my parser. It's a mess of a code
> (though it works) and I'd rather use something more... readable! So, I'm
> asking, basically, is Biopython's parser good already or are there still
> some incompatibilities?
> 
> Thanks a lot!
> 
> João Rodrigues
> 
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