[BioPython] blastn parameters

Peter biopython at maubp.freeserve.co.uk
Thu Apr 24 12:22:56 UTC 2008


Stefanie Lück wrote:
> Thanks for all the reply!
> Could someone tell me also  how I can change the paramters over Biopyton? I
> this possible?
>
>  Stefanie

You should be able to invoke any of the Blast options via Biopython.

from Bio.Blast.NCBIStandalone import blastall
help(blastall)

from Bio.Blast.NCBIWWW import qblast
help(qblast)

Peter




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