[BioPython] NCBIXML Blast parser Error for TBLASTN
Sebastian Bassi
sbassi at gmail.com
Sun Apr 13 05:49:44 UTC 2008
On Sat, Apr 12, 2008 at 6:23 PM, Alaguraj Veluchamy
<alaguraj.v at gmail.com> wrote:
> If you do "formatdb" of blast with ".gbk" files of NCBI database, then
> the sequence co-ordinates are processed and gives numbers which doesnt
> match with the original sequence.
> Record.Py in the lib module doesnt say much about this.
Formatdb works with fasta or ans1 as input. I think this issue is not
a problem of the parser. The parser reads whatever is in the BLAST
output file. You should take a look on how did you generate it.
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