[BioPython] script to extract records from nucleotide database
Peter
biopython at maubp.freeserve.co.uk
Wed Nov 14 00:01:45 UTC 2007
Matthew Abravanel wrote:
> Hi Christof and everyone,
>
> Thanks for all the comments and everything, the OS I am using is NetBSD
> 3.1 , and I think you were right Peter about my biopython version I think it
> was 1.43 instead of the latest 1.44 version. If I get the latest
> 1.44v ersion of biopython do you think the code should work or do I
> need to think of something else?
Well, that example code looked like it should have worked on Biopython
1.43 so I am a little puzzled. I don't know if anyone else is using
NetBSD with Biopython, but the import problem could be some sort of
installation problem. This is why I was asking about how and where you
installed Biopython (i.e. did you install from source?)
If you do try Biopython 1.44, watch out for bug 2393, we managed to
break Bio.GenBank.NCBIDictionary - on the bright side its a one line
fix: http://bugzilla.open-bio.org/show_bug.cgi?id=2393
Peter
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