[BioPython] Fwd: Biopython - SwissProt
Peter (BioPython List)
biopython at maubp.freeserve.co.uk
Mon Jan 8 16:16:35 UTC 2007
Jeffrey Chang wrote:
> I am forwarding your email and code to the biopython mailing list in
> case someone else has more to add, or can integrate your changes.
Thank you Jeff & Kristian,
Some similar changes have been made in BioPython which should have fixed
the ID and RX lines.
However, I have updated CVS to include support for Line type OH
(Organism Host) for viral hosts based on Kristian's code. I have
checked the unit test passes, and verified the code does work on one
viral example, http://www.expasy.org/uniprot/P18522.txt
This properly closes bug 2043 (RX and OH lines are broken)
http://bugzilla.open-bio.org/show_bug.cgi?id=2043
If you could try the latest version of the SwissProt parser on your
system please Kristian, that would be very useful.
Thank you
Peter
P.S. We do still need to handle new style DT lines more gracefully,
http://bugzilla.open-bio.org/show_bug.cgi?id=1956
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