[BioPython] accessing "data quality" Phrap records in Genbank

[Frank Kauff]

On Wed, 01 Aug 2007 22:05:33 +0100
  Peter <biopython at maubp.freeserve.co.uk> wrote:
> Emanuel Hey wrote:
>> for some sequence records, NCBI has a a record of the
>> Phrap scores corresponding to the sequence  (i.e. one
>> score for each base). 
>> 
...>
> I'm not aware of any code in Biopython to cope with 
>either of these file 
> formats.
>

Ace.py and Phd.py in Bio/Sequencing are two parsers that 
parse the phd and ace files generated by phred and phrap

Frank
  
>> I need to filter the data by a certain score
> 
> Are you trying to select parts of the associated 
>sequence?
> 
> Peter
> 
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--
J-Prof. Dr. Frank Kauff
Molecular Phylogenetics
FB Biologie, 13/276
TU Kaiserslautern
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