[BioPython] accessing "data quality" Phrap records in Genbank

Emanuel Hey jodyhey at yahoo.com
Wed Aug 1 19:56:54 UTC 2007


for some sequence records, NCBI has a a record of the
Phrap scores corresponding to the sequence  (i.e. one
score for each base). 

These are typically records containing draft sequences
from genome projects

to see an example, try this link

http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&qty=1&c_start=1&list_uids=153792835&uids=&dopt=qual&dispmax=5&sendto=&fmt_mask=0&from=begin&to=end&extrafeatpresent=1&ef_CDD=8&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512


How could I go about downloading these sequence
quality scores?  

I need to filter the data by a certain score

thanks

jhey



       
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