[BioPython] accessing "data quality" Phrap records in Genbank
Emanuel Hey
jodyhey at yahoo.com
Wed Aug 1 19:56:54 UTC 2007
for some sequence records, NCBI has a a record of the
Phrap scores corresponding to the sequence (i.e. one
score for each base).
These are typically records containing draft sequences
from genome projects
to see an example, try this link
http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nuccore&qty=1&c_start=1&list_uids=153792835&uids=&dopt=qual&dispmax=5&sendto=&fmt_mask=0&from=begin&to=end&extrafeatpresent=1&ef_CDD=8&ef_MGC=16&ef_HPRD=32&ef_STS=64&ef_tRNA=128&ef_microRNA=256&ef_Exon=512
How could I go about downloading these sequence
quality scores?
I need to filter the data by a certain score
thanks
jhey
____________________________________________________________________________________
Moody friends. Drama queens. Your life? Nope! - their life, your story. Play Sims Stories at Yahoo! Games.
http://sims.yahoo.com/
More information about the Biopython
mailing list